PhD thesis Gijs Selten - Supplementary data
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https://zenodo.org/record/13739993
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资源简介：
This repository contains the Supplementary data of the experimental chapters published in the PhD thesis of Gijs Selten MSc.
Chapter 2 - Functional capacities drive recruitment of bacteria into plant root (already online on bioRxiv --> https://www.biorxiv.org/content/10.1101/2024.08.22.609090v1.article-info)
Supplementary data
Supplementary tables
Chapter 3 - Key genetic components for bacterial success in complex communities revealed using comparative metagenome analysis
Supplementary data
Orthogroup profiles of SynCom members
Figures S7 and S9 (close-up)
Chapter 4 - SyFi: generating and using sequence fingerprints to distinguish SynCom isolates
SyFi bash script
Supplementary data:
Microbiome tables - SyFi (minscorefraction 65, 75, 85, 95 (original), and 100%), Salmon directly on amplicons, Qiime2-VSEARCH (95, 97, 98, 99, 100% match), shotgun metagenomics table
Percentages mapped reads
16S copy number
VSEARCH clustering results
16S fingerprints
16S V3V4 fingerprints
16S V5V7 fingerprints
16S original sequences
16S V3V4 original sequences
16S V5V7 original sequences
Chapter 5 - Bacillus: driver of distinct functional states in plant root bacterial synthetic communities
Supplementary data
Supplementary tables
Jaccard Distance matrix on isolate composition
Jaccard Distance matrix on genus composition
Jaccard Distance matrix on KO composition
Bray Curtis Distance matrix on isolate composition
Bray Curtis Distance matrix on genus composition
Bray Curtis Distance matrix on KO composition
创建时间：
2025-09-01
