Whole metagenome sequencing, using long and short reads for the assembly of a gut microbiome. Gut microbiome following long antibiotic course

The data in this project was collected as part of a pilot study that was looking at how routes of administration of antibiotics affect the gut microbiome. The DNA was extracted from one patient's faecal samples at seven timepoints. These include pre treatment, post treatment, and samples from during oral administration and IV administration of anti biotics. Short reads and nanopore long reads were used in combination to generate a metagenome assembly.