Kaiso-meDNA systems

Name: Kaiso-meDNA systems
Creator: Purushottam B. Tiwari; Central Department of Physics, Tribhuvan University, Kirtipur, Kathmandu, Nepal; Department of Physics, Florida International University, Miami, FL 33199, USA; Bidhya Thapa
Published: 2022-11-15T00:00:00+08:00

Zenodo2022-11-15 更新2026-04-07 收录

分子动力学模拟

DNA相互作用

数据链接：

https://zenodo.org/record/7322448 数据链接链接失效反馈

官方服务：

资源简介：

This list contains the pdb, psf and dcd files of 7 different systems. The MeCG2, MeCG2_mutCG, MeECad, MeECad_mod and MeECad_mod_mutTA systems have three replica runs of length 600 ns or 400ns. The MeCG2_E535A and MeECad_mod_mutTA systems each have a single run of 200 ns. Note: sequences with a C/G pair in the 5'-flanking site: MeCG2_mutCG, MeECad, MeECad_mod; Sequences with a T/A pair in the 5'-flanking site: MeCG, MeECad_mod_mutTA. The trajectories uploaded here are saved at 1 ns/frame (i.e. 600 frames = 600 ns). The systems are pbc-wrapped and aligned for protein. Trajectories that are not pbc-wrapped and saved more frequently at 0.2 ns/frame (i.e. 5x as many frames) are available upon request. To load the trajectories in VMD: <pre><code>mol new 01_MeCG2.psf mol addfile 01_MeCG2_run1.dcd waitfor all</code></pre>

提供机构：

Purushottam B. Tiwari; Central Department of Physics, Tribhuvan University, Kirtipur, Kathmandu, Nepal; Department of Physics, Florida International University, Miami, FL 33199, USA; Bidhya Thapa

创建时间：

2022-11-15