ICB Data TSV Files

ICB data objects extracted into TSV files.

Processed by using this script: https://github.com/bhklab/icb_data_exploration_and_analysis/blob/main/Code/rds_to_tsv.R.

Information about each data object is available at https://www.orcestra.ca/clinical_icb.

Each zip file contains

patient metadata ICB_[Study]_metadata.tsv

assay data ICB_[Study]_[Assay Name].tsv

assay gene metadata ICB_[Study]_[Assay Name]_genes.tsv

The Assay Name can be "expr", "expr_gene_tpm", "expr_gene_counts", "expr_isoform_tpm", "expr_isoform_counts".

"expr" and "expr_gene_tpm" are gene expression data in TPM, which is present across all datasets.

Other assay data are present if raw gene expression data were available.