hg19 syntenic ages

# Hg19 46-way vertebrate tree syntenic block age files. Information for hg19 46-way vertebrate multiple sequence alignment can be found here - http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/README.txt # Scripts generating these files (1) Creating syntenic block .bed files https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_spec_count_msa-hg19.py (2) Assigning most recent common ancestor (MRCA) and patristic distances to syntenic blocks https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_synteny_age_hg19.py <br> ### Bed file<br> # File columns ["chr", "start", "end", "strand", "reference_genome", "species_count", "length_synteny_block", "max_mrca", "max_patr"] # Definitions "max_mrca" = the phylogenetic distance from Homo sapiens to the most recent common ancestor of the oldest taxon. "max_patr" = the phylogenetic distance from Homo sapiens to the oldest taxon. "species_count" = the number of species' genomes the syntenic block maps to.