Transcripts up- or down- regulated in MI or MII liquid and solid cultures, showing differences in their abundances (coefficient of variation between liquid and solid higher than 0.7).

(Fig. 4B, E, H, K, N, Q, T; Fig. 5B, E, H, K). Average log2 abundance values from three biological replicates of MII with respect to MI in solid (S) and liquid (L) cultures. Only transcripts with significant abundances are shown (log2 abundance greater than ±1 in liquid and/or solid cultures). Functions as in Table 1. Genes with “unknown” functions (Table S1) were not included.