The complexity of data transfers in nMC3 and tgMC3*.
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*N, number of taxa;N-2, number of down node;L, number of sites, i.e. length of compressed DNA sequences;g, GPU global memory, →g denotes write operation on g and ←g denotes read operation on g;ls, lnScaler;d(x), memory space used to store x. Particularly, d(f) is memory space used to store a float variable, so d(f) is 4 bytes. A residue in d(clp) is 16d(f), and d(tip) is 64d(f) bytes.
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2015-12-02
