CDC HAI-Seq

CDC’s Division of Healthcare Quality Promotion-hosted Umbrella for any sequence data (genome, plasmid, amplicon, shotgun) generated by CDC and other public health laboratories that are related to healthcare-associated infections (HAIs). Can include any data format, including raw reads and/or assemblies. We have implemented a standard scheme for isolate/sample identification. We request for those sites interested in submitting data to this umbrella project, please contact: [e-mail] to be assigned your unique code. DHQP has guidance available for posting metadata, which can be provided upon request. In general, submitters should not post any metadata that compromises confidentiality. Questions? Please email [e-mail].