Referred to as “Cryptic_CommonVars”, this data file contains all the cryptic-specific polymorphisms found in the CommonVars data file.

Additionally, this data highlights the count and abundance of each cryptic-specific polymorphism, in addition to flagging polymorphisms that appeared in the same sequence read as a cryptic-specific polymorphism (linked) and polymorphisms found abundantly in both positive and negative samples (ubiquitous). Additionally, this file flagged polymorphisms associated with the Delta SARS-CoV-2 lineage and the bat coronavirus, RATG13. Yellow-highlighted SRRs indicate positive samples, while orange-highlighted SRRs indicate negative samples. (XLSX)