Additional file 3: Table S1. of A genome-wide analysis of the lysophosphatidate acyltransferase (LPAAT) gene family in cotton: organization, expression, sequence variation, and association with seed oil content and fiber quality

Sequences of primers used for studies of GhLPAAT expression. Table S2. Sequences of primers of GhLPAATs to identify single nucleotide polymorphic markers (SNPs) based on single strand conformation polymporphism (SSCP). Table S3. Domain analysis and annotation. Table S4. Oil and protein quantitative trait loci (QTL). Table S5. Identification of putative sequence variation (SNPs) by SOAPsnp in NMGA-062 vs. NMGA-105 database. L indicates SNP only exists in long fiber length line NMGA-062 (fiber length, 32.58 mm) when compared with the sequenced genome sequence of TM-1. S indicates SNP only exists in short fiber length line NMGA-105 (fiber length, 27.06 mm) when compared with the sequenced genome sequence of TM-1. L/S indicates SNP exists in the two lines. Table S6. Identification of putative SNPs by SOAPsnp in Xuzhou 142 vs. Xuzhou 142 fl database. WT indicates SNP only exists in Xuzhou 142 when compared with the sequenced genome sequence of TM-1. fl indicates SNP only exists in Xuzhou 142 fl when compared with the sequenced genome sequence of TM-1. WT/fl indicates SNP exists in the two lines. The polymorphic SSCP marker is shown in red color. (XLSX 26 kb)