Mural cells sustain a homeostatic vascular macrophage niche limiting chronic inflammation

If you use any of these data, please cite the corresponding publication:
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammationPekayvaz et al., Immunity, 2023 . ( https://doi.org/10.1016/j.immuni.2023.08.002 )
scRNA-seq data
processed:
processed_kidney_seurat.Rdsprocessed_lung_seurat.Rds
count matrices:
sample_M1_raw_feature_bc_matrix.h5sample_M2_raw_feature_bc_matrix.h5
script:
process_sctransform.R
functions.R with helper functions (mainly for plotting) used in the process-script.
RNA-seq
macrophages:
macs_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)
aorta:
aorta_control_vs_knockout.hisat2.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)
Dead vs. Living:
peri_Dead_vs_Living.exon_all.DirectDESeq2.tsv|xlsx (count data and DESeq2 results)