Distinct evolutionary trajectories in the Escherichia coli pangenome occur within sequence types

Supplementary Material for '<strong>Distinct evolutionary trajectories in the</strong> <em><strong>Escherichia coli</strong></em> <strong>pangenome occur within sequence types</strong>' as published in Microbial Genomics. <br> pangenome_data.zip contains (for each ST): <strong>ST_updated_download.txt</strong> - the download list from Enterobase including accession numbers, Bio Project IDs and sample IDs. <strong>ST_gene_presence_absence_roary.csv</strong> - gene presence/absence matrix output by Panaroo <strong>ST_pan_genome_reference.fa</strong> - linear reference genome output by Panaroo