MAGScoT bin refinement benchmarking data and output

This repository holds the data to benchmark the new metagenomic bin-refinement tool MAGScoT (in review; preprint: https://www.biorxiv.org/content/10.1101/2022.05.17.492251v1; github: https://github.com/ikmb/MAGScoT) in comparison to the gold standard tools DASTool and metaWRAP, as well as to the individual binning tools METABAT2, MAXBIN2, CONCOCT, and VAMB.

These are two datasets:

marine: CAMI2 marine dataset

hmpgut: 50 gut metagenome samples from the HMP2 project

The files included for each sample are:

*.fasta: the filtered (>2kbp) assembled metagenomes

*.prodigal.faa: the prodigal gene calls as amino acid sequences

*.hmm: HMM annotations for 120 bacterial and 56 archaeal marker genes

*.final_ctb.tsv: all binning output (contig-to-bin assignments) of the individual binning and bin-refinement tools