Motifs identified by F-Motif and Motif-X using the kinase specific all species foreground data sets (FAPKA, FAPKC, FACK2, FACDK) and the all species background data set (BA) with G = 15 and T = 15.

An asterisk in column 2 indicates a new motif that is found by F-Motif but not found by Motif-X. The information in other columns corresponds to F-Motif. The fourth column labeled “Match/Total” shows the number of times the associated motif appears in the present (remaining) foreground data. The fifth column, PCM hit frequency, gives the number of times, out of the fifty iterations, the associated motif is detected and it refers to the PCM encoding. The sixth column, Background match, displays the percentage of the present (remaining) background data that has matched with the associated motif. Also a “$” symbol in column 2 indicates a new motif (satisfying the criteria on statistical significance) that is found by F-Motif but not found by Motif-X if we do not remove the repeated sequences.