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Dataset 1. Validated natural and cryptic mRNA splicing mutations

NIAID Data Ecosystem2026-05-02 收录

剪接变异分析

遗传突变验证

数据链接：

https://zenodo.org/record/1488210 数据链接链接失效反馈

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资源简介：

Source data computed by the Shannon pipeline and Veridical, displayed on the ValidSpliceMut (https://validsplicemut.cytognomix.com/) website.

应用场景：

创建时间：

2024-07-22

RNA-Seq病毒研究

剪接变异分析

File description: Gene-level counts using the gtf file from the release 34 of GENCODE https://www.gencodegenes.org/human/release_34 Split counts spanning from one exon to another using

NIAID Data Ecosystem50

Candidate short NLR N-termini with ASMs.

植物免疫受体NLR

剪接变异分析

The FASTA file includes sequences from clusters with high content of ASM-like sequences, according to the BASS PCFGs (S5 Data). (FA)

NIAID Data Ecosystem30

Probes and primers used for qRT-PCR amplification for TaqMan and SYBR chemistries.

RT-PCR实验设计

剪接变异分析

We note that all probes selected span exon-exon junctions that are shared between different splice variants of the same clh gene, so they do not distinguish between splice variants.

NIAID Data Ecosystem20

SuppTable5_INDO_sQTL_nominal_GRC38_allchrs.tsv

基因组学

剪接变异分析

Supplementary table 5: Genome-wide nominal statistics for sQTL testing. Refer to Ibeh et al, "Profiling genetically driven alternative splicing across the Indonesian Archipelago", for additional detai

DataCite Commons2024-05-08 更新30

Epigenetically-controlled tumor antigens derived from splice junctions between exons and transposable elements [ChIP-seq]. Epigenetically-controlled tumor antigens derived from splice junctions between exons and transposable elements [ChIP-seq]

癌症表观遗传调控

剪接变异分析

To analyze regulation of JET expression, we generated Setdb1-deficient MC38 and B16OVA cells, using lentivirus-based CRISPR/Cas9. Ctrl and KO cells lines were used to perform ChIP-seq against H3K9me3

NIAID Data Ecosystem20

Dataset 1. Validated natural and cryptic mRNA splicing mutations

资源简介：

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