This dataset accompanies the poster “Coarse-grained ssDNA with Dissipative Particle Dynamics,” presented at the 19th Doctoral Days of the Nanoscience, Materials, and Chemical...
This dataset contains the coarse-grained molecular dynamics simulations used to analyze peptide-lipid interactions using the Martini 3 force field. The system was constructed and coarse-grained follow
Input files for publication: Ivo Kabelka, Radim Brožek, and Robert Vácha: Selecting Collective Variables and Free Energy Methods for Peptide Translocation Across Membranes, Journal of Chemical Informa
README file to the project files provided as supporting information to the manuscript “Kinetics of radiation-induced DNA double-strand breaks through coarse-grained simulations" Autho
Reproducing dynamical properties, such as diffusion coefficients, in coarse-grained (CG) molecular dynamics simulations can be challenging due to the loss of fine-grained details, such as atomic vibra
