CytoBERT - Data

Links: GitHub: https://github.com/bckrlab/cytobert Code: https://doi.org/10.5281/zenodo.21299708 Data: https://doi.org/10.5281/zenodo.21291131 Docker: https://doi.org/10.5281/zenodo.21298697 This publication uses data provided by ImmPort: ImmPort, toward repurposing of open access immunological assay data for translational and clinical research. Bhattacharya S, Dunn P, Thomas CG, Smith B, Schaefer H, Chen J, Hu Z, Zalocusky KA, Shankar RD, Shen-Orr SS, Thomson E, Wiser J, Butte AJ. Sci Data. 2018 Feb 27;5:180015. doi: 10.1038/sdata.2018.15 The pre-training dataset artifacts.zip contains pre-processed data from the following ImmPort datasets: SDY207: Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes SDY461: Monitoring of tissue-specific immune responses in man to naturally occurring pathogens using mass cytometric monitoring SDY515: Monozygotic and Dizygotic Twin Pair T-Cell Responses to Influenza Vaccination SLVP018 2010 SDY788: Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates SDY997: AMP Lupus Network Project: Molecular Characterization of Lupus Nephritis and Correlation with Response to Therapy SDY998: AMP Rheumatoid Arthritis Phase 1 SDY1479: Plasmablast response to inactivated and live attenuated influenza vaccines (TIV3/TIV3 ID) in 2014 SDY1535: TIGIT is upregulated by HIV-1 infection and marks a highly functional adaptive and mature subset of natural killer cells SDY1708: Broad dysregulation of innate immunity and hematopoiesis distinguishes mild from severe COVID-19 SDY1733: Single-Cell immune signature for detecting early-stage HCC and early assessing PD-1 immunotherapy efficacy SDY1773: Human plasmacytoid dendritic cells mount a distinct antiviral response to virus-infected cells SDY2011: A shift in lung macrophage composition is associated with COVID-19 severity and recovery SDY2015: Mass cytometry analysis of PBMCs from peanut-sensitized tolerant and clinically allergic infants SDY2189: Systems vaccinology of the BNT162b2 mRNA vaccine in humans SDY2471: U19 CCHI_Project 1. The Role of CD4 Memory Phenotype, Memory, and Effector T Cells in SDY2497: Effects of Aging on Primary and Secondary Vaccine Responses in a 15-Year Longitudinal Cohort SDY2739: Clinical Immunity to Malaria Involves Epigenetic Reprogramming of Innate Immune Cells SDY2823: The Sound Life Project Healthy Adult Immunotypes