CABBAGE-Bench: an ML-ready, shift-aware benchmark for genotype-to-phenotype antimicrobial resistance prediction
收藏资源简介：
Benchmark construction code, fixed evaluation protocols, archived result tables and derived benchmark data for CABBAGE-Bench, based on the CABBAGE genotype–phenotype database (EMBL-EBI AMR Portal, release 2025-11). The benchmark covers six priority bacterial species and 61,247 isolates, four evaluation protocols (random, lineage-aware, geography-aware and time-aware), three genomic representations, and four baseline families including an internal rule-based comparator. This versioned record contains exactly two archives: cabbage-bench-depot.zip (MIT-licensed code, documentation and result tables) and cabbage-bench-donnees.tgz (CC BY 4.0 derived label matrices, feature matrices, lineage assignments and fixed split indices). Upstream tables, assemblies and annotations are not redistributed.
