Additional file 9 of The derepression of transposable elements in lung cells is associated with the inflammatory response and gene activation in idiopathic pulmonary fibrosis

Additional file 9: Supplemental Table 6. Summary of the linear model test of all the identified TE-gene loci pairs. A. AT2 linear model analysis summary. B. AM linear model analysis summary. The association between the log2-transformed TE expression (independent variable) and the log2-transformed gene expression (dependent variable) was tested using a linear model. Genes, TE locus, distance from the gene and the genomic region of the TE locus are shown. The p value1 represents relationship between gene expression and adjacent TE-locus expression, and the p value2 - represent difference in the regression slopes between the two groups (IPF and donor). The p-value correction was performed using the Benjamini and Hochberg (BH) test and (p.adjust1 and p.adjust2).