Supplementary tables

Supplementary Tables for "WIND (Workflow for pIRNAs aNd beyonD): a strategy for in-depth analysis of small RNA-seq data". <strong>Supplementary Table 1</strong>. Statistics of GFT files obtained for human and mouse genome. The file reports the data of the filtering process and the final GTF data. <strong>Supplementary Table 2</strong>. Spike-in quantification. For each sample are shown the percentage of each piRNA-like molecules, respect to the raw reads count, using three quantification methods. <strong>Supplementary Table 3</strong>. Statistics of sncRNA data analysis for mouse cardiomyocytes. The file reports the results obtained using the two methods applied in the workflow and the list of top 100 expressed piRNAs. <strong>Supplementary Table 4</strong>. Differentially Expressed molecules found for GSE68246 dataset. In yellow are highlighted miRNA DE in common with Boo <em>et al.</em>, in red and green are highlighted the up- and down-expressed molecules respectively, in light blue the molecules with an adjusted p-value less than 0.05. <strong>Supplementary Table 5</strong>. Differentially Expressed molecules found for BRCA TCGA dataset. In red and green are highlighted the up- and down-expressed molecules respectively, in light blue the molecules with an adjusted p-value less than 0.05. For DE piRNA molecules, the predicted possible target RNAs are also provided.