GenBank Contamination
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https://figshare.com/articles/GenBank_Contamination/11994579/1
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Contamination prediction for GenBank (Dec 2018) by conterminator (https://github.com/martin-steinegger/conterminator).<br>The predictions are TSV formated. The following is the column defintion:<br><br>1.) Numeric identifier<br>2.) Contaminated identifier<br>3.) Kingdom (0: Bacteria&Archaea, 1: Fungi, 2: Metazoa, 3: Viridiplantae, 4: Other Eukaryotes)<br>4.) Species name<br>5.) Alignment start<br>6.) Alignment end<br>7.) Corrected contig length<br>8.) Identifier of the longest contaminating sequence<br>9.) Kingdom of the longest contaminating sequence<br>10.) Species name of the longest contaminating sequence<br>11.) Length of the longest contaminating sequence<br>12.) Count how often sequences from contaminating kingdom align<br><br>Contaminated identifiers can occur multiple times if multiple alignments were detected.
提供机构：
figshare
创建时间：
2020-03-17
