Mouse_lung_superinfection_ST

This is the spatial transcriptomics data of lung tissue of mouse models with super-infection. 4 conditions of infection were included. (N_1, N_2: Naive; S_1, S_2: Staph infection on day 6; F_1, F_2: Influenza infection on day 0; FS_1, FS_2: both Influenza infection on day 0 and Staph infection on day 6). Please find the detailed information in github https://github.com/TianhaoLiu829/Superinfection_ST.git and related publications in communications biology. File "lung_combine_after_batch.rds" is the combined seurat object of 8 samples. The related information for each spot was saved in metadata slot. This seurat object should be loaded before running the code in github. File "ST_lung_superinfection_raw_count.zip" is the zip file with the gene by spot matrix with raw counts and x,y location files for each sample.