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Lake Tanganyika eDNA Metabarcoding Study: Illumina MiSeq Raw Sequence Data

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rdr.ucl.ac.uk2019-10-02 更新2025-03-23 收录
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https://rdr.ucl.ac.uk/articles/dataset/Lake_Tanganyika_eDNA_Metabarcoding_Study_Illumina_MiSeq_Raw_Sequence_Data/9874451/1
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Raw sequence data for three Illumina Miseq runs that were used within: Doble C. J, Hipperson H, Salzburger W, Horsburgh G, Mwita C, Murrell D. J and Day J. J. (Accepted) Testing the performance of environmental DNA metabarcoding for surveying highly diverse tropical fish communities: A case study from Lake Tanganyika. Environmental DNAEnvironmental DNA samples collected from Lake Tanganyika were amplified with four separate primer sets: 12S-V5, MiFish-U for the 2X150bp original run, Cichlid_CR and 16s_Teleo for 2X150bp original run, and Cichlid_CR only for the 2X250bp additional run. For further information on the sequence data see paper and SEQ_DATA_INFO.xlsx

本数据集包含了用于检测坦噶尼喀湖高度多样化的热带鱼类群落的环境DNA metabarcoding实验的原始序列数据。该实验涉及三个Illumina Miseq测序流程。具体而言,从坦噶尼喀湖收集的环境DNA样本使用四组不同的引物集进行扩增,包括12S-V5、MiFish-U用于2X150bp原始流程,Cichlid_CR和16s_Teleo用于2X150bp原始流程,以及仅Cichlid_CR用于2X250bp的附加流程。有关序列数据的详细信息,请参阅相关论文及SEQ_DATA_INFO.xlsx文件。
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