Table S2. Output of 2Â ĂÂ 150 Illumina sequencing of HIV-1 and HIV-2 after data processing. For each sample, the numbers of read pairs before and after quality filtering are indicated, both grouped a
IGG1 FAB FRAGMENT (83.1) COMPLEX WITH 16-RESIDUE PEPTIDE (RESIDUES 304-321 OF HIV-1 GP120 (MN ISOLATE)) Descriptor: Fab 83.1 - heavy chain, Fab 83.1 - light chain, Peptide MP1 Authors: Stanfield, R.L,
Amino acid positions are in reference to the SHIV-1157ipd3N4 envelope. Percentage of viral population containing a particular mutation is shown. “-”represent no information.
Table S5. Identification and masking of plasmid error hotspots. Plasmid error hotspots (i.e. common sites for background errors due to PCR or sequencing) were identified by examining the distribution
#Neutralization epitope in the Gp120 outer domain before CD4 binding.$Neutralization epitope induced in Gp120 after CD4 binding.*Epitopes outside of the CD4 binding site [37].@The effect of each antib
