A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity

1. Barley PanTs Supplementary Data1-8_10-14.xlsx

Ten Datasets referred to in the main text (Supplementary Data 1-10), presented in tabular format as separate sheets in a joint Excel formatted file.

Supplementary Data 1: Basic statistics of the RTDs

Supplementary Data 2: Ordering of genotypes incorporated into the linear pan-genome.

Supplementary Data 3: Gene categories of GsRTD

Supplementary Data 4: Alternative splicing events for highly expressed transcripts from core-single-copy genes (average TPM > 10)

Supplementary Data 5: Gene copy number variation cluster significantly correlated with the gene expression.

Supplementary Data 6: C-repeat/DRE-Binding Factor (CBF) genes identifier in GsRTD and their location in the genome

Supplementary Data 7: Genotypes with the 141Mb 7H inversion and non-inversion

Supplementary Data 8: Differentially expressed genes in the 7H inversion.

Supplementary Data 10: Detailed example of a split pattern in Golden Promise

Supplementary Data 11: Barley cv. Morex Expression Atlas Metadata

Supplementary Data 12: GA-Pathway gene expression in PanTs experiment

Supplementary Data 13: Yield and agro data for Ga2ox3-7

Supplementary Data 14: Statistics GA2ox and 7

2. Supplementary Data9.csv A csv file containing genotype-specific co-expression network results (modules and community assignments) with annotation and MorexV3 gene IDs.

3. Supplementary Data15.txt This tab delimited text file is too large for inclusion in the main Supplementary Data file and contains the details of how genes/transcripts from the genotype specific RTDs map onto genes in PanBaRT20.