Host removal database: Homo sapiens, Sars-Cov-2, PhiX174

💾 cleanup-db Kraken2 database, built upon a viral sequence masked human reference from: Handley, Scott A. (2020). Virus+ Sequence Masked Human Reference Genome (hg19) (1.0) [Data set]. Zenodo. [10.5281/zenodo.4116107] but separating chromosomes as artificial taxa to allow for QC, and includes Sars-Cov-2 and PhiX 174 💾 gutcheck-db A very small DB containg some common gut bacteria and Human and Murine mitochondrial genome: Akkermansia muciniphila Bacteroides fragilis Bifidobacterium longum Blautia obeum strain Escherichia coli Enterococcus faecium Prevotella copri See: https://github.com/telatin/cleanup