Genes up-regulated in stationary phase in Cultures 1 and 2 and in further conditions in vitro or in vivo.

Table 3 Genes that were up-regulated at 48 h in macrophages [26] and in Cultures 1 and 2 of M. tuberculosis in late stationary phase (Table S3, supporting information), and in at least one other condition either in vitro or in vivo model as indicated in Table 3. The details of cluster profiles can be found in the supporting information at http://xenakis.mrc-bsu.cam.ac.uk/wernisch/enrichment/html/.