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Additional file 1 of Genome of the pincer wasp Gonatopus flavifemur reveals unique venom evolution and a dual adaptation to parasitism and predation

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DataCite Commons2024-02-20 更新2024-07-28 收录
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Additional file 1: Supplementary Table 1. Statistics of Nanopore sequencing. Supplementary Table 2. Statistics of Illumina sequencing. Supplementary Table 3. Statistics of Gonatopus flavifemur genome assembly by Nanopore reads. Supplementary Table 4. Statistics of Gonatopus flavifemur genome assembly after error-corrected by Illumina and Nanopore reads. Supplementary Table 5. Genome size of G. flavifemur estimated by flow cytometry and 17-mer analysis. Supplementary Table 6. The mapping rate with short sequencing reads of Gonatopus flavifemur genome. Supplementary Table 7. Genes in detoxification system and chemoreception system in 13 hymenopterans. Supplementary Table 8. TE sequences in Gonatopus flavifemur and other surveyed species. Supplementary Table 9. Characteristics of DNA TEs in Gonatopus flavifemur. Supplementary Table 10. GO enrichment analysis of Aculeate-specific genes, Biological Process category (padj < 0.05). Supplementary Table 11. GO enrichment analysis of Gonatopus flavifemur special genes. (padj < 0.05). Supplementary Table 12. Genes under positive selection in Gonatopus flavifemur detected by both aBSREL model in HyPhy and branch-site model in PAML. Supplementary Table 13. GO enrichment analysis of Gonatopus flavifemur expanded gene families, Biological Process category (padj < 0.05). Supplementary Table 14. Venom gland-associated genes (VGGs) in Gonatopus flavifemur. Supplementary Table 15. GO enrichment analysis of VGGs in Gonatopus flavifemur, Biological Process category (padj < 0.05). Supplementary Table 16. Chitinase-like genes in Gonatopus flavifemur and other species. Supplementary Table 17. Neprilysin-like genes in Gonatopus flavifemur and other Hymenoptera genomes. Supplementary Table 18. Upregulated genes in the prey-feeding female transcriptomes compared to the sucrose-feeding female transcriptomes. Supplementary Table 19. Yellow genes and expression level in Gonatopus flavifemur. Supplementary Table 20. Downregulated genes in the prey-feeding female transcriptomes compared to the sucrose-feeding female transcriptomes. Supplementary Table 21. GO enrichment analysis of extremely female-biased genes in Gonatopus flavifemur. Biological Process category (padj < 0.05). Supplementary Table 22. GO enrichment analysis of extremely male-biased genes in Gonatopus flavifemur. Biological Process category (padj < 0.05). Supplementary Table 23. Extremely male-biased genes in Gonatopus flavifemur. Supplementary Table 24. Sample information for sequencing used in this study.
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创建时间:
2021-07-28
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