Drivers of viral diversity and sharing in marine mammals (supporting data)

Supporting data and code for the paper entitled "Drivers of viral diversity and sharing in marine mammals". Data Contigs resulting from pipeline (as described in Materials and Methods): final_min_length_0vertebrate_viral_hits.csv: vertebrate viral contigs final_min_length_0non_vertebrate_viral_hits.csv: non-vertebrate viral contigs final_min_length_0all_viral_hits.csv: all contigs combined diamond_hits_vert_viruses.csv: vertebrate viral contigs with closest result from diamond BLASTX against nr and match statistics Metadata: final_min_length_0all_viral_hits.csv: details of samples and additional variables for each sequencing pool vOTUs: cluster_by_genus_len{150/250/400}.csv: vOTUs derived by clustering at all ID thresholds (see Materials and Methods) for three different contig length cutoffs vOTU_representative_sequences.csv: longest sequence from each vOTU (min. length 250nt, clustering threshold 95%), with taxonomy assignment and top hit from diamond BLASTX vs. nr vOTU_representative_sequences.fasta: longest sequence from each vOTU (min length 250nt, clustering threshold 95%) in fasta format pairwise_identity_within_vOTUs.csv: pariwise identity values for all sequences clustered into each vOTU (min length 250nt, clustering threshold 95%) Code Demographics_CommunityComposition_models.Rmd: Code to run GLM of demographic and taxonomic variables against viral richness, PERMANOVA of viral community composition and Mantel test of community composition versus host phylogenetic distance Sharing.Rmd: Code to derive vOTUs from raw contigs, build unipartite virus-host network and run GLMs of network node degree against demographic and taxonomic variables