Xenium benchmarking- xenium formatted to AnnData 2 (human breast datasets)

This repository contains Xenium datasets formated to AnnData format for benchmarking the characteristics and performance of Xenium (Marco Salas et al., 2024). Please visit https://github.com/Moldia/Xenium_benchmarking to obtain further information about the datasets. On summary, AnnData contains the expression of profiled cells with some metadata, including spatial position. In adata.obs['spots'] we also include the position of decoded reads as well as some additional metadata and quality. This repository is the part 2/4 of all repositories containing the datasets used in the study already formated to AnnData