Additional file 4 of A pioneering genotypic and phylogenetic characterisation of Cichorium crops through a genome-scale sequencing for future breeding innovations

Supplementary Material 4: Supplementary Table 2. Genomic coordinates and haplotypic variants identified after the filtering step. Each row reports a locus retained in the final dataset used for genetic analyses. CHROM: chromosome or contig accession number; Start: the genomic position where the catalog sequence starts; Catalog ID: the identifier assigned to the locus by the Stacks catalog; Polymorphic Sites: positions within the locus that show sequence variation compared to the catalog reference; REF Haplotype (Frequency): the most represented haplotype and its frequency across all samples; ALT Haplotypes (Frequencies): the alternative haplotypes and their respective frequencies.