Ryp1, Ryp2, and Ryp3 ChIP enrichment in HDAC mutants.

Excel-compatible tab-delimited text conforming to JavaTreeView extended CDT format. Each row represents a gene associated with at least one Ryp as given in the UNIQID column. The NAME column gives short names taken from S1 Data of [86] with additional names and corrections based on human curation. This is followed by Ryp-specific peak coordinates; where more than one peak exists for a given gene, the peak with the best MACS2 score is given. Description and HcG217B_pred (WUSTL G217B predicted gene accessions), HcG217B_rc (Edwards and colleagues G217B transcript accessions [11]), HcG217B_acc (UCSF1 gene accessions [86]), and HcG217B (Gilmore and colleagues transcript accessions [18]); and Ryp1_ChIP, Ryp2_ChIP, Ryp3_ChIP, and Ryp4_ChIP (indicating genes with promoters bound by Ryp TFs in [17]) are taken from S1 Data of [86]. Following a GWEIGHT column, included for JavaTreeView compatibility, is log2 differential ChIP enrichment between WT and rpd3 samples for each Ryp. (S10_Table.TXT)