Data and results from Spage2vec: Unsupervised representation of localized spatial gene expression signatures

This repository contains spatial gene expression data for reproducing analysis results of spage2vec manuscript [1]. [1] Partel G, Wählby C. Spage2vec: Unsupervised representation of localized spatial gene expression signatures. The FEBS Journal. 2020. Acknowledgement: We thank Xiaoyan Qian, Simone Codeluppi, Jeffrey Moffitt, Kok Hao Chen, Alistair N. Boettiger and Dhananjay Bambah-Mukku for generating and sharing in situ sequencing [2], osmFISH [3] and MERFISH [4-5] datasets. And Jeongbin Park, Wonyl Choi for uploading osmFISH [3] and MERFISH [4] data to public repository. [2] Qian, Xiaoyan, et al. "Probabilistic cell typing enables fine mapping of closely related cell types in situ." Nature methods 17.1 (2020): 101-106. [3] Codeluppi, Simone, et al. "Spatial organization of the somatosensory cortex revealed by osmFISH." Nature methods 15.11 (2018): 932-935. [4] Moffitt, Jeffrey R., et al. "Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region." Science 362.6416 (2018): eaau5324. [5] Chen, Kok Hao, et al. "Spatially resolved, highly multiplexed RNA profiling in single cells." <em>Science</em> 348.6233 (2015): aaa6090.