Virus Pathogen Database for EsViritu

Databases for EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic data File descriptions v3.2.2/ virus_pathogen_database.all_metadata.tsv = sequence and taxonomy info for each sequence in database virus_pathogen_database.fna = fasta formatted nucleotide database of all virus genomes and segments virus_pathogen_database.mmi = minimap2 formatted index of database (for short read mapping) Relates to the tool in the following repository: EsViritu Updates since 3.1.1: addition of over 1,000 assemblies of human/animal/plant viruses that were previously not included for various reasons removal of some endogenous virus genomes to avoid mislabeling human/animal DNA Masking of a few virus genomes with low-complexity repeat regions