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Additional file 4 of Loop Catalog: a comprehensive HiChIP database of human and mouse samples

NIAID Data Ecosystem2026-05-02 收录

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https://figshare.com/articles/dataset/Additional_file_4_of_Loop_Catalog_a_comprehensive_HiChIP_database_of_human_and_mouse_samples/29374852 数据链接链接失效反馈

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Additional file 4: Table S3. Restriction Enzyme Sequences Used in the HiC-Pro Pipeline.

应用场景：

创建时间：

2025-06-20

染色质三维结构分析

基因组测序

Chromatin three-dimensional (3D) organization inside the cell nucleus determines the separation of euchromatin and heterochromatin domains. Their segregation results in the definition of active and in

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The molecular basis of lamin- chromatin interactions [SAMMY-Seq]

核纤层-染色质互作

染色质三维结构分析

Lamins are the main constituents of the nuclear lamina, a fibrillar layer underlying the inner nuclear membrane. The nuclear lamina governs chromatinorganization through lamina-associated domainswithi

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Additional file 4 of Characterizing chromatin interactions of regulatory elements and nucleosome positions, using Hi-C, Micro-C, and promoter capture Micro-C

染色质三维结构分析

染色质环检测

Additional file 4: Table S3. Chromatin loops identified from this study. (A) summary table of loops called using Mustache (B) summary table of loops called using SIP (C) summary table of loops called

Figshare2023-04-13 更新20

Additional file 2 of SpectralTAD: an R package for defining a hierarchy of topologically associated domains using spectral clustering

染色质三维结构分析

基因组数据处理

Additional file 2: Table S1. Summary of gaps. The percentage of gaps is summarized for all chromosomes at 10 kb, 25 kb, and 50 kb resolution using raw GM12878 data [3]. Gaps are separated based on whe

Figshare2020-07-20 更新40

Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain

DNA复制时序

染色质三维结构分析

Clustering of strong replicators associated with active promoter are sufficient to establish an early-replicating domain Repli-Seq: A Wt DT40 chicken cell line and one clonal homozygous cell line cont

NIAID Data Ecosystem20

Additional file 4 of Loop Catalog: a comprehensive HiChIP database of human and mouse samples

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