ABM Cell Migration Data and Its Statistics

The folder contains two subfolders.<br><br>1. AgentBasedModel_SpatioTemporalResults<br><br>The data in this folder is simulation results of the agent-based model for inflammation in .mat format.<br><br>The data consists of array of 100x100 matrices. The size of the array is 10000, the number of simulation iterations.<br>Hence the data is 10000x100x100 array. Each with 10 repetitions/trials.<br><br>The data is arranged based on cases presented in the paper. The file is separated by simulation trials and four categories.<br>The file name denotes this as follows,<br><br>The appendix _tr denote trial number, e.g. _tr6 means trial 6<br><br>The file name begins with category, e.g. epth_ means epithelial agents<br><br>The categories are as follows,<br><br>&gt; files with epth prefix: epithelial cells matrix, 0= death, 1=alive<br>&gt; files with fbr prefix: fibroblast cells matrix, 0= empty (no fibroblast present), 11 or -2= a fibroblast present<br>&gt; files with mcr prefix: macrophage cells matrix, 0=empty (no macrophage present), 1 or 2= a macrophage present<br>&gt; files with mot prefix: matrix of both macrophage and fibroblast, 0=empty (no macrophage present) else= a motile cell (either fibroblast or macrophage) present <br><br><br><br>2. TransferEntropy<br>The data here are the calculated Transfer Entropy. <br><br>The files are stored in folder according to cases as described in the paper.<br><br>In each file, users can find ten 20x20 matrices. Each entry is transfer entropy value of macrophage and fibroblast.<br><br>The indexing is T(fibroblast, macrophage).<br><br>From these matrices, probability distribution can be created, and networks of Macrophage and Fibroblast can be generated. These are explained in the paper.