Data from "Maximum pseudolikelihood inference of allopolyploid species networks in the presence of incomplete lineage sorting"

This data deposit contains the simulated datasets and the biological dataset from "Maximum pseudolikelihood inference of allopolyploid species networks in the presence of incomplete lineage sorting". Each simulated dataset includes: True networks: True phylogenetic network topologies. True gene trees: Simulated gene trees, with branch lengths in substitutions. Estimated gene trees: Gene trees inferred by IQ-TREE from simulated sequence alignments. Sequence alignments: Simulated DNA sequences for each locus. Missing-copy masks: Records of gene copies removed in the paired 5% missing-copy experiment. The top level README describes the folder structure and file formats.