Pisum sativum, accession JI2822, genome assembly v1.3

Genome assembly of Pisum sativum accession JI2822. This data set is linked to NCBI PRJEB75659.

Files:

Pisum_sativum-JI2822-JIC_v1.3.fasta.gz (Genome assembly)

Pisum_sativum-JI2822-JIC_v1.3.gff3.gz (Gene annotation)

Pisum_sativum-JI2822-JIC_v1.3.repeatannotation.tar (Repeat annotation)

Content of Pisum_sativum-JI2822-JIC_v1.3.repeatannotation.tar:

all_scaf_run_all_default_tidehunter.sorted.gff3.gz    output TideHunterall_scaf_run_all_short_monom_tidehunter.sorted.gff3.gz    output TideHunter

all_scaf_run_all_default_annotation.sorted.gff3.gz    output TideCluster

DANTE_filtered_output.sorted.gff3.gz    output DANTE pipelineDANTE_LTR_full.sorted.gff3.gz    full-length copies of LTR retrotransposons

Repeat_annotations_merged_07082023.sorted.gff3.gz    output RepeatMaskerRM_all_libs_concatenated_slashes.fa.gz    input repeat library for RepeatMasker

all_repeats_for_masking.sorted.bed.gz    merged BED file with all annotated repeats