Alignment and sequence data for dimensionality of protein sequence space project

The included datasets: Vertebrates dataset - ncbi_vertebrates_data.zip - Amino acid alignments - Nucleotide alignments for dN/dS calculation - Raw amino acid sequences of sample 616 protein families used for pairwise alignments (unlike other datasets can't be obtained by removing the gaps from alignments due to use of MACSE for codon alignment) - Species annotation file for sequence IDs Enterobacterales dataset - Amino acid alignments - Nucleotide alignments for dN/dS calculation - Species annotation file for sequence IDs Gammaproteobacteria dataset - Nucleotide alignments for dN/dS calculation For more information, see https://github.com/oist/sequence-space-dimension.