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Composition of reference genome sets used for analysis.

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Notes: ALL - All prokaryotic genomes; BAAC – Automatically selected diverse prokaryotic genomes (see method for details); BAS – Only single representative genomes of species from same genus and related genera; BAC – Non-redundant bacterial genomes; GAMMA – Non-redundant γ-proteobacterial genomes; BANR – Non-redundant Bacterial and Archaeal genomes. Asterisk marks represent groups that belong to Archaea super-kingdom. Classification is extracted from http://www.ncbi.nlm.nih.gov/genomes/lproks.cgi.
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