Additional file 8 of Statistical learning quantifies transposable element-mediated cis-regulation

Additional file 8. Related to Fig. 3. Contains estimated TE subfamily activities for the RNA-seq dataset of transgene overexpression in hESCs [47] in .csv format, available at URL: https://doi.org/10.5281/zenodo.8116824 . Title of data: Transposable element (TE) subfamily cis-regulatory activities estimated from 441 transgene overexpression experiments in human embryonic stem cells (hESCs). Description of data: Activities were estimated using craTEs with the weighted susceptibility matrix N computed with $$L = 2.5e5kB$$ L = 2.5 e 5 k B . Rows are transposable element (TE) subfamilies, columns are as follows: $$\cdot$$ · Estimate: estimated cis-regulatory activity, correponds to a linear regression coefficient. $$\cdot$$ · Std. Error: standard error of linear regression coefficient. $$\cdot$$ ·  t value: t value corresponding to t-test with H0: Estimate = 0 and HA: Estimate $$\ne$$ ≠ 0. $$\cdot$$ ·   $$Pr(>|t|)$$ P r ( > | t | ) : probability (p-value) of observing a more extreme t value. $$\cdot$$ · p_adj: p-values adjusted with the Benjamini Hochberg procedure. $$\cdot$$ · TE: TE subfamily. $$\cdot$$ · condition: concatenation of the name of the overexpressed transgene and the timepoint. $$\cdot$$ · transgene: symbol for the overexpressed transgene. $$\cdot$$ · timepoint: time under transgene induction via DOX treatment.