File S1 - Tandem RNA Chimeras Contribute to Transcriptome Diversity in Human Population and Are Associated with Intronic Genetic Variants

File includes Figures S1–S3 and Tables S1–S8. Figure S1: Regional association gene plots for CTBS->GNG5 chimera. Results are shown in the region flanking 100 kb both sides of the index SNPs. The marker SNPs are shown in purple and the color of the dots represent the degree of linkage disequilibrium (based on r2) in relation to the index SNP based on the March 2012 release of the 1000 Genomes data in European population. Figure S2: Regional association gene plots for HMSD->SERPINB8 chimera. Results are shown in the region flanking 100 kb both sides of the index SNPs. The marker SNPs are shown in purple and the color of the dots represent the degree of linkage disequilibrium (based on r2) in relation to the index SNP based on the March 2012 release of the 1000 Genomes data in European population. Figure S3: Regional association gene plots for TAP2->HLA-DOB chimera. Results are shown in the region flanking 100 kb both sides of the index SNPs. The marker SNPs are shown in purple and the color of the dots represent the degree of linkage disequilibrium (based on r2) in relation to the index SNP based on the March 2012 release of the 1000 Genomes data in European population. Table S1: Intrachromosomal RNA chimeras residing on the same strand, which orientation implies inversion. Table S2: Identified tandem RNA chimeras located on the same strand. Table S3: Identified intrachromosomal RNA chimeras located on different strands. Table S4: Identified interchromosomal RNA chimeras. Table S5: Gene expression values estimated for tandem RNA chimeras partner genes in each human population. Table S6: All annotated transcripts and exons residing at the fusion junction for the identified tandem RNA chimeras. Table S7: Genetic variants found in poly(A) sites of tandem RNA chimeras upstream genes. Table S8: All identified genetic variants associated with tandem RNA chimera formation. (PDF)