qfomam_pdf_data.tar.gz

This archive contains all the pdf files generated as results - with tree and alignment for each of the orthogroups where canonicals were confirmed or changes were proposed - for the 'ortho2tree' analysis described in the manuscript "Improved selection of canonical proteins for reference proteomes" of eight QfO (Quest for Orthologs) mammal proteomes, based on UniProtKB data (release UP2022_05).
A web interface for filtering and viewing the pdf files with the trees from the result of that analysis (and subsequent ones) is available at fasta.bioch.virginia.edu/ortho2tree
Code and instructions for running the analysis on this data are available at: https://github.com/g-insana/ortho2tree