METRIN-KG Data
收藏Zenodo2026-04-09 更新2026-05-26 收录
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https://zenodo.org/doi/10.5281/zenodo.15689186
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资源简介：
Files associated with MEtabolomes, TRaits, and INteractions-Knowledge Graph (METRIN-KG). Contains input and output files used in mapping taxonomy, metadata, ontology and knowledge graph construction. Associated github repositories are metrin-kg and earth_metabolome_ontology
Directory structure looks like the following. This directory can be used in combination with the code at the github repo metrin-kg, globi raw data and TRY database raw data.
metrin-kg└── metrin-kg-data ├── case-studies │ ├── CS1 │ │ ├── CS1_viz.py │ │ ├── metrin-kg_APlx2T_q1.tsv │ │ ├── metrin-kg_CAIpHR_q2.tsv │ │ └── metrin-kg_MptP26_q3.tsv │ ├── CS2 │ │ ├── CS2_viz.py │ │ └── metrin-kg_ZVBghY_q4.tsv │ ├── CS3 │ │ ├── CS3_viz.py │ │ └── metrin-kg_t49TVV_q5.tsv │ ├── CS4 │ │ ├── CS4_viz.py │ │ └── metrin-kg_orF1qY_q6.tsv │ └── CS5 │ ├── CS5_viz.py │ ├── metrin-kg_rtvxnd_q7.tsv │ └── metrin-kg_YEEGSZ_q8.tsv ├── ontology │ └── emi.ttl.gz ├── processed │ ├── globi │ │ ├── correctedBiologicalSexNames.tsv │ │ ├── correctedBodyPartNamesGlobi.csv │ │ ├── correctedLifeStageNamesGlobi.csv │ │ ├── mappedBiologicalSexNames.tsv │ │ ├── unmappedBiologicalSexNames.tsv │ │ ├── verbatim_mappedBodyPartNamesGlobi.csv │ │ ├── verbatim_mappedLifeStageNamesGlobi.csv │ │ ├── verbatim_unmappedBodyPartNamesGlobi_mod.csv │ │ └── verbatim_unmappedLifeStageNamesGlobi_mod.csv │ ├── KG │ │ ├── enpkg-rdf-v4.tar.gz │ │ ├── examples_METRINKG-v0.1.ttl.gz │ │ ├── globi_output_w3id_v0.ttl.gz │ │ ├── taxonomy_output_v0.ttl.gz │ │ ├── trydb_output_w3id_v0.ttl.gz │ │ └── void_METRINKG-v0.1.ttl.gz │ ├── trydb │ │ ├── EmiMappingToTryDb.txt │ │ ├── qudtMappingToTryDb_full.txt │ │ └── qudtMappingToTryDb.txt │ ├── wdTax_duplicates.txt │ ├── wdTax_GloBI.txt.gz │ ├── wdTax_SPARQL_lineage_filtered_aligned.txt.gz │ ├── wdTax_SPARQL_lineage_filtered.txt.gz │ ├── wdTax_SPARQL_lineage.txt.gz │ ├── wdTax_SPARQL.txt.gz │ └── wdTax_TRYdb.txt.gz └── raw ├── enpkg_wd_pfId.csv.gz └── Try20243712146549_TRY6.0_SpeciesList_TaxonomicHarmonization.csv
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Zenodo创建时间：
2025-06-18
