Screening a new European hake (Merluccius merluccius) chromosome-level genome assembly suggests an XX/XY sex determining system driven by the SRY-box transcription factor 3 (sox3). Supplementary files.

Table S2A: Detailed gene annotation of M. merluccius genome per chromosomeTable S5: Partition of the total genetic diversity (FIT) between (FST) and within (FIS) components in male (5) and female (5) subpopulations of M. merluccius for SNPs genotyped and mapped across the whole chromosome using WGS. Results of average figures using a sliding window of 10 SNPs for FIS and FST in the two additional columns to the right. Highlighted in red the most interesting regions at chromosomes surpassing the established thresholds for both estimators, and in green selected regions on chromosomes 5 and 12 with high Fst and including suggestive genes putatively involved in sexual conflict.Figure S5: Representation of genetic differentiation (FST) and intrapopulation fixation index (FIS) components in male and female subpopulations of M. merluccius for SNPs mapped through WGS and using sliding windows of 10 SNPs both estimators. Red arrows point to the most interesting associated with sex (see Table S4) and green arrows regions to regions on chromosomes 5 and 12 potentially involved in sexual conflict.