Additional file 3: of Maize RNA PolIV affects the expression of genes with nearby TE insertions and has a genome-wide repressive impact on transcription

Analysis of the genome transcribed fraction at level of individual growth conditions. The tables summarize the increase in the fraction of genome transcribed (at least two mapped reads) observed in rpd1/rmr6 mutant compared to B73, independently calculated for each individual sample. The proportion of the genome transcribed was calculated considering either multi-mapped reads (MAPQ ≥ 1) or uniquely mapped reads (MAPQ = 50) after down-sampling at level of individual RNA-Seq library. Mean and standard deviation for the fraction of genome covered by at least two reads are reported too. (XLSX 13 kb)