Table S5 from Integrated Pan-Cancer Map of EBV-Associated Neoplasms Reveals Functional Host–Virus Interactions

list of DEGs (fold change >1.5, FDR<0.05) between EBV+ and EBV- samples in each cancer (A-G). For each gene, shown are the mean expression value across EBV- and EBV+ cancer samples. The log-fold change, p-value and FDR values were obtained using differential expression analysis in edgeR. H, genes involved in Type I and Type II interferon activity (see methods). I, interferon activity of EBV+ tumor types. Shown in columns are cancer types, classification into IFN+ or IFN- groups for EBV+ samples or control group for EBV- samples, EBV status, Type I and Type II interferon signature score, and z-scores of genes related to Type I and Type II interferon signatures, for each sample (rows). J, expression values (transcripts per million; T.P.M.) of all genes (rows) in each sample (columns).