Anoplophora glabripennis Official Gene Set OGSv1.2
收藏agdatacommons.nal.usda.gov2024-02-15 更新2025-01-15 收录
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资源简介:
The Anoplophora glabripennis genome was recently sequenced, assembled and annotated as part of the i5k pilot project by the Baylor College of Medicine, in collaboration with the McKenna Laboratory at the University of Memphis. The Anoplophora glabripennis research community has manually reviewed and curated the computational gene predictions and generated an official gene set, OGSv1.2. OGSv1.2 was generated by merging gene set AGLA-c0.5.3-Models generated by the Baylor College of Medicine, and community-curated models in the Apollo software, after QC of the Apollo output. Resources in this dataset:Resource Title: Anoplophora glabripennis Official Gene Set OGSv1.2. File Name: AGLA_OGS_v1.2.tar.gzResource Description: The attached tar.gz archive (AGLA_OGS_v1.2.tar.gz) contains the following files:
agla_OGS_v1_2_cds.fa.gz. CDS sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2_peptide.fa.gz. Amino acid sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2_cDNA.fa.gz. Transcript sequences of Anoplophora glabripennis genome annotations OGSv1.2.
agla_OGS_v1_2.gff3.gz. Gff3 of all gene predictions of Anoplophora glabripennis genome annotations OGSv1.2.
近期,德克萨斯州贝勒医学院与孟菲斯大学麦肯纳实验室合作,作为i5k试点项目的一部分,对光肩星天牛(Anoplophora glabripennis)基因组进行了测序、组装和注释。光肩星天牛研究领域的研究人员对计算基因预测进行了人工审查和整理,生成了官方基因集OGSv1.2。OGSv1.2通过合并贝勒医学院生成的基因集AGLA-c0.5.3-Models及在Apollo软件中社区整理的模型,并在对Apollo输出进行质量控制后生成。本数据集包含以下资源:
资源标题:光肩星天牛官方基因集OGSv1.2。
文件名:AGLA_OGS_v1.2.tar.gz。
资源描述:所附tar.gz压缩包(AGLA_OGS_v1.2.tar.gz)包含以下文件:
agla_OGS_v1_2_cds.fa.gz。光肩星天牛基因组注释的CDS序列OGSv1.2。
agla_OGS_v1_2_peptide.fa.gz。光肩星天牛基因组注释的氨基酸序列OGSv1.2。
agla_OGS_v1_2_cDNA.fa.gz。光肩星天牛基因组注释的转录序列OGSv1.2。
agla_OGS_v1_2.gff3.gz。光肩星天牛基因组注释所有基因预测的Gff3格式数据OGSv1.2。
提供机构:
Ag Data Commons



