Annotation files of coding genes for the genomes of 8 voles
收藏DataCite Commons2025-04-24 更新2025-05-07 收录
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https://figshare.com/articles/dataset/Annotation_files_of_coding_genes_for_the_genomes_of_8_voles/28856249
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We selected 22 species for genomic evolution analysis of Arvicolinae, including Qinghai vole, Mandarin vole, Brandt's vole, prairie vole (<i>Microtus ochrogaster</i>, GCF_000317375.1), creeping vole (<i>Microtus oregoni</i>, GCF_018167655.1), short-tailed field vole (<i>Microtus agrestis</i>, GCA_902806775.1), Common vole (<i>Microtus arvalis</i>, GCA_007455615.1), reed vole (<i>Microtus fortis</i>, GCA_014885135.1), root vole (<i>Microtus oeconomus</i>, GCA_007455595.1), water vole (<i>Microtus richardsoni</i>, GCA_019206885.1), Transcaucasian mole vole (<i>Ellobius lutescens</i>, GCA_001685075.1), Northern mole vole (<i>Ellobius talpinus</i>, GCA_001685095.1), muskrat (<i>Ondatra zibethicus</i>, GCA_004026605.1), Eurasian water vole (<i>Arvicola amphibius</i>, GCF_903992535.2), Bank vole (<i>Myodes glareolus</i>, GCA_004368595.1), Chinese hamster (<i>Cricetulus griseus</i>, GCF_003668045.3), mouse (<i>Mus musculus</i>, GCF_000001635.27), Norway rat (<i>Rattus norvegicus</i>, GCF_015227675.2), domestic guinea pig (<i>Cavia porcellus</i>, GCF_000151735.1), Rhesus monkey (<i>Macaca mulatta</i>, GCF_003339765.1), human (<i>Homo sapiens</i>, GCF_000001405.39) and dog (<i>Canis lupus familiaris</i>, GCF_014441545.1). Among them, eight voles lack genome structure annotation information, including short-tailed field vole, Common vole, reed vole, root vole, water vole, Transcaucasian mole vole, Northern mole vole and muskrat. Therefore, Homologue-based, <i>de novo</i> and transcriptome-based strategies were used to predict the structure of coding genes of these voles.
提供机构:
figshare
创建时间:
2025-04-24



