This is a workshop for TraRECo, a de novo transcriptome assembler with read error correction, developed by S. Yoon.The workshop include MATLAB scripts to implement the assembly and configuration file

Figshare2017-11-02 更新40

Supportting files for the article of 'A chromosome-level genome of the mud crab (Scylla paramamosain Estampador) provides insights into the evolution of chemical and light perception in this crustacean' published in Molecular Ecology Resources, 2020

甲壳类基因组

基因注释

This is the annotation files for genome assembly of Scylla paramamosain, including gff3, mRNA and protein sequences. The article is accepted by Molecular Ecology Resource and will be published online

NIAID Data Ecosystem30

Illumina sequencing and assembly summary of the Octodonta nipae transcriptome.

转录组组装

数据质量评估

*Q20 percentage: Percentage of nucleotide error rate under 0.01. **N: Uncertain base in the output sequencing data. ***N50: Median length of all contigs or unigenes.

NIAID Data Ecosystem40

Summary mixed RNA staticstics

RNA测序分析

转录组组装

This dataset contains RNA-seq and transcriptome assembly characteristics

Figshare2022-08-03 更新30